PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0078s0017.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 860aa    MW: 93469.1 Da    PI: 6.614
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0078s0017.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07547568527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                            Cr++++ G+C++ + C+F H+p
  Sphfalx0078s0017.3.p 547 VCRYYLQ-GFCSRSEACPFLHSP 568
                           6******.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS503025.281205240IPR001313Pumilio RNA-binding repeat
SMARTSM003563.6E-4543568IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.0E-5545567IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5547568IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873547569IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4547567IPR000571Zinc finger, CCCH-type
PROSITE profilePS5030344.685679859IPR033133Pumilio homology domain
Gene3DG3DSA:1.25.10.103.1E-52690844IPR011989Armadillo-like helical
SuperFamilySSF483719.21E-47696847IPR016024Armadillo-type fold
PROSITE profilePS503029.131700735IPR001313Pumilio RNA-binding repeat
SMARTSM000251.8E-6700735IPR001313Pumilio RNA-binding repeat
PfamPF008063.9E-6701734IPR001313Pumilio RNA-binding repeat
PfamPF008068.3E-11736770IPR001313Pumilio RNA-binding repeat
SMARTSM000251.7E-10736771IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030212.537736771IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.247772810IPR001313Pumilio RNA-binding repeat
SMARTSM000250.0053774810IPR001313Pumilio RNA-binding repeat
PfamPF008066.8E-5775804IPR001313Pumilio RNA-binding repeat
SMARTSM000250.0028811846IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.921811846IPR001313Pumilio RNA-binding repeat
PfamPF008063.1E-7812844IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
MEQDDEEFEQ LLCEIPHVTS TNPVVDVPRA TSAPPHLEEL QRVHGSEIEE GSSIGMHEDE  60
ALPAVKPFVD IRCDEHYESF YRSYAGVKKL PPPMDNRTLY SDLPVLLSPK SSSSSSGSSA  120
THISPFLAEL TLDGNPGGGG HQRKQHRLDM QRKQHQLTSL QHQLQPQQAQ QQQREPSPSF  180
QAPGAHQYEG VPSSQNDRSS SSDHHLTAAF GNLSFEEGSS ILLQSLIDDN TGGDNRAILS  240
NGSVCGRGSS AVVQHPLSNG HGLVGSNGLY SHLDVYGTGS SAPSYEFYAS RSSPSPDLFT  300
GKPVVNMNGL RNGSSCYDGM VSDYAEAVAT QAFKKAMRQQ NSPGGGYGSG GAGAAAGSQY  360
HQQLEVVAAT LQAATRNPSA VASGNILPSS QLQKQILYDY NDMDYFAAQQ LVEAQAQAQA  420
TATAAQYAHL EEQQQQHRLY VQQQLMERQK QIQLLANLQA QVNGRPGGGG TYPSAGSMPI  480
RGSRNASALQ QLGFAAAANA QNNQALERKL RLQQALNPPD VVWGSNTEIS ELGFSDNSCR  540
TPTVGSVCRY YLQGFCSRSE ACPFLHSPLH GTKAVSHTTP VAVKEASRST AVRDGRLPPY  600
PDKILRRNTR ASHSGKTNSF SPVAGAQRIG DMVVSNGHGH GYLNGHCSSG SGHISPTDLS  660
DTLAHPQLRI QDHMEFDVGR LMTPHSLQQQ QPPKYTTLEE VEGHIYLIAK DQHGCRFLQK  720
KFDEGGPKDV EKIFHEIISH ITELMKDPFG NYLVQKLLEV CDEKQRMEIL HSVTMDGELV  780
RISLNMHGTR AVQKLIETLK SPEQVAMVIT ALSDGVVELI KDLNGNHVVQ RCLQKLSHED  840
SQQLRGAIHL GSQNSMVIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dzs_A2e-3569784829178Pumilio homology domain family member 4
4dzs_B2e-3569784829178Pumilio homology domain family member 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPP1S41_292V6.10.0(Physcomitrella patens)